On the original topic, I usually prefer to do manual population. That way you can pick exactly the products you want in your categories. It also means you get more familiar with the products and niche.
However it is more time consuming and you have to revisit your stores to add more products over time. I do this anyway freshening up content, but some people might want a more "autopilot" situation.
Also some niches you can do autopopulation no problem, whereas others may be disorganised on Amazon and therefore you would get a lot of junk in your stores.
Having now set up several sites using FSB I agree that some subjects struggle with the auto-population, but others get it spot on! As a result I now set up auto-population, leave it for a week (before going live) and then re-visit to see how it is coping. I then maybe tweak the Search criteria, including Keywords and Filters, or switch to manual population if need.
Even within the same site one category may work fine, but then I need to manually populate another as it just doesn't work out for that one. So at the moment I am now doing both!
Picking up on Roy's point on SERPS I would be interested to hear Carey's response as I too have found that after initial, very quick, appearances on page 2 of Google the site then vanishes. We all know how temperamental Google can be, but this seems to be a feature of FSB sites.
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